Download and Process 'MeSH' and 'SCR' Embeddings — data_mesh

This function downloads 'MeSH' and 'SCR' embeddings data from the specified URLs and processes it for use. The data is saved locally in RDS format. If the files do not exist, they will be downloaded and processed.

data_mesh_embeddings(
  path = NULL,
  use_persistent_storage = FALSE,
  force_install = FALSE
)

Arguments

path: A character string specifying the directory path where data should be stored. If not provided and persistent storage is requested, it defaults to a system-appropriate persistent location managed by `rappdirs`.
use_persistent_storage: A logical value indicating whether to use persistent storage. If TRUE and no path is provided, data will be stored in a system-appropriate location. Defaults to FALSE, using a temporary directory.
force_install: A logical value indicating whether to force re-downloading of the data even if it already exists locally.

Value

A data frame containing the processed Mesh and SCR embeddings data.

Details

This dataset is not viewable until it has been downloaded.

Citation

Noh, J., & Kavuluru, R. (2021). Improved biomedical word embeddings in the transformer era. Journal of biomedical informatics, 120, 103867.

Examples

# \donttest{
if (interactive()) {
  data <- data_mesh_embeddings()
}
# }